IL_6SKF_211

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UCUAC*GGCAG

Length

10 nucleotides

Bulged bases

6SKF|1|BA|U|2794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_211 not in the Motif Atlas

Homologous match to IL_4V9F_094

Geometric discrepancy: 0.1694

The information below is about IL_4V9F_094

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_45790.2

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

12

Unit IDs

6SKF|1|BA|U|2792
6SKF|1|BA|C|2793
6SKF|1|BA|U|2794
6SKF|1|BA|A|2795
6SKF|1|BA|C|2796
*
6SKF|1|BA|G|2821
6SKF|1|BA|G|2822
6SKF|1|BA|C|2823
6SKF|1|BA|A|2824
6SKF|1|BA|G|2825

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BY

50S ribosomal protein L24e

Chain Bc

50S ribosomal protein L31e