IL_6SKF_213

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UU*AUAG

Length

6 nucleotides

Bulged bases

6SKF|1|BA|U|2815, 6SKF|1|BA|A|2816

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_213 not in the Motif Atlas

Geometric match to IL_5J7L_349

Geometric discrepancy: 0.0929

The information below is about IL_5J7L_349

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6SKF|1|BA|U|2800
6SKF|1|BA|U|2801
*
6SKF|1|BA|A|2814
6SKF|1|BA|U|2815
6SKF|1|BA|A|2816
6SKF|1|BA|G|2817

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BS

50S ribosomal protein L19e

Chain Bc

50S ribosomal protein L31e