IL_6SKF_215

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GAUAAG*CGAAGC

Length

12 nucleotides

Bulged bases

6SKF|1|BA|A|2867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_215 not in the Motif Atlas

Homologous match to IL_4V9F_096

Geometric discrepancy: 0.1133

The information below is about IL_4V9F_096

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6SKF|1|BA|G|2839
6SKF|1|BA|A|2840
6SKF|1|BA|U|2841
6SKF|1|BA|A|2842
6SKF|1|BA|A|2843
6SKF|1|BA|G|2844
*
6SKF|1|BA|C|2864
6SKF|1|BA|G|2865
6SKF|1|BA|A|2866
6SKF|1|BA|A|2867
6SKF|1|BA|G|2868
6SKF|1|BA|C|2869

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BG

50S ribosomal protein L6

Chain BK

50S ribosomal protein L13

Chain Bj

50S ribosomal protein L40e