IL_6SKF_222

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UGUAAG*UUCAG

Length

11 nucleotides

Bulged bases

6SKF|1|BA|C|3001

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_222 not in the Motif Atlas

Homologous match to IL_4V9F_099

Geometric discrepancy: 0.1204

The information below is about IL_4V9F_099

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

6SKF|1|BA|U|2973
6SKF|1|BA|G|2974
6SKF|1|BA|U|2975
6SKF|1|BA|A|2976
6SKF|1|BA|A|2977
6SKF|1|BA|G|2978
*
6SKF|1|BA|U|2999
6SKF|1|BA|U|3000
6SKF|1|BA|C|3001
6SKF|1|BA|A|3002
6SKF|1|BA|G|3003

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BY

50S ribosomal protein L24e