IL_6SKF_225

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GUAC*GGC

Length

7 nucleotides

Bulged bases

6SKF|1|BB|A|4

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_225 not in the Motif Atlas

Geometric match to IL_5M0H_001

Geometric discrepancy: 0.2384

The information below is about IL_5M0H_001

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6SKF|1|BB|G|2
6SKF|1|BB|U|3
6SKF|1|BB|A|4
6SKF|1|BB|C|5
*
6SKF|1|BB|G|121
6SKF|1|BB|G|122
6SKF|1|BB|C|123

Current chains

Chain BB

5S rRNA

Nearby chains

Chain BQ

50S ribosomal protein L18