IL_6SKF_228

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GGUGUAC*GGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_228 not in the Motif Atlas

Homologous match to IL_4V9F_106

Geometric discrepancy: 0.1312

The information below is about IL_4V9F_106

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6SKF|1|BB|G|76
6SKF|1|BB|G|77
6SKF|1|BB|U|78
6SKF|1|BB|G|79
6SKF|1|BB|U|80
6SKF|1|BB|A|81
6SKF|1|BB|C|82
*
6SKF|1|BB|G|102
6SKF|1|BB|G|103
6SKF|1|BB|A|104
6SKF|1|BB|A|105
6SKF|1|BB|A|106
6SKF|1|BB|C|107

Current chains

Chain BB

5S rRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BJ

50S ribosomal protein L10e

Chain Ba

50S ribosomal protein L30