IL_6SKF_244

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UUAGUAG*(4AC)GAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_244 not in the Motif Atlas

Homologous match to IL_4V9F_007

Geometric discrepancy: 0.1485

The information below is about IL_4V9F_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6SKF|1|BA|U|230
6SKF|1|BA|U|231
6SKF|1|BA|A|232
6SKF|1|BA|G|233
6SKF|1|BA|U|234
6SKF|1|BA|A|235
6SKF|1|BA|G|236
*
6SKF|1|BA|4AC|244
6SKF|1|BA|G|245
6SKF|1|BA|A|246
6SKF|1|BA|A|247
6SKF|1|BA|A|248
6SKF|1|BA|G|249

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BO

50S ribosomal protein L15

Chain BP

50S ribosomal protein L15e