IL_6SKF_245

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UGAAC*(OMG)GAUGUG

Length

12 nucleotides

Bulged bases

6SKF|1|BA|U|293

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_245 not in the Motif Atlas

Geometric match to IL_4V9F_108

Geometric discrepancy: 0.1403

The information below is about IL_4V9F_108

Detailed Annotation

Kink-turn with embedded cWW pair

Broad Annotation

No text annotation

Motif group

IL_65996.1

Basepair signature

cWW-L-cWW-L-tSH-R-cWW

Number of instances in this motif group

4

Unit IDs

6SKF|1|BA|U|265
6SKF|1|BA|G|266
6SKF|1|BA|A|267
6SKF|1|BA|A|268
6SKF|1|BA|C|269
*
6SKF|1|BA|OMG|290
6SKF|1|BA|G|291
6SKF|1|BA|A|292
6SKF|1|BA|U|293
6SKF|1|BA|G|294
6SKF|1|BA|U|295
6SKF|1|BA|G|296

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BH

50S ribosomal protein L7Ae

Chain BP

50S ribosomal protein L15e