IL_6SKF_248

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UUAAG*(4AC)GAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_248 not in the Motif Atlas

Homologous match to IL_4V9F_020

Geometric discrepancy: 0.1438

The information below is about IL_4V9F_020

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6SKF|1|BA|U|697
6SKF|1|BA|U|698
6SKF|1|BA|A|699
6SKF|1|BA|A|700
6SKF|1|BA|G|701
*
6SKF|1|BA|4AC|713
6SKF|1|BA|G|714
6SKF|1|BA|A|715
6SKF|1|BA|A|716
6SKF|1|BA|G|717

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4