IL_6SKF_251
3D structure
- PDB id
- 6SKF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- (OMG)AAGC*GCGAU(A2M)GC
- Length
- 13 nucleotides
- Bulged bases
- 6SKF|1|BA|G|929, 6SKF|1|BA|G|933
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SKF_251 not in the Motif Atlas
- Homologous match to IL_4V9F_024
- Geometric discrepancy: 0.166
- The information below is about IL_4V9F_024
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
6SKF|1|BA|OMG|800
6SKF|1|BA|A|801
6SKF|1|BA|A|802
6SKF|1|BA|G|803
6SKF|1|BA|C|804
*
6SKF|1|BA|G|927
6SKF|1|BA|C|928
6SKF|1|BA|G|929
6SKF|1|BA|A|930
6SKF|1|BA|U|931
6SKF|1|BA|A2M|932
6SKF|1|BA|G|933
6SKF|1|BA|C|934
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BE
- 50S ribosomal protein L4
- Chain BO
- 50S ribosomal protein L15
- Chain BP
- 50S ribosomal protein L15e
- Chain Bh
- 50S ribosomal protein L37e
Coloring options: