IL_6SKF_258

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GGAACU(OMC)GG*CUGUC

Length

14 nucleotides

Bulged bases

6SKF|1|BA|G|2105

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_258 not in the Motif Atlas

Homologous match to IL_4V9F_111

Geometric discrepancy: 0.1061

The information below is about IL_4V9F_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

6SKF|1|BA|G|1814
6SKF|1|BA|G|1815
6SKF|1|BA|A|1816
6SKF|1|BA|A|1817
6SKF|1|BA|C|1818
6SKF|1|BA|U|1819
6SKF|1|BA|OMC|1820
6SKF|1|BA|G|1821
6SKF|1|BA|G|1822
*
6SKF|1|BA|C|2103
6SKF|1|BA|U|2104
6SKF|1|BA|G|2105
6SKF|1|BA|U|2106
6SKF|1|BA|C|2107

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BL

50S ribosomal protein L14