IL_6SKF_261

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

(OMU)G*UAAA

Length

6 nucleotides

Bulged bases

6SKF|1|BA|A|2012, 6SKF|1|BA|A|2013

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_261 not in the Motif Atlas

Homologous match to IL_4V9F_067

Geometric discrepancy: 0.2259

The information below is about IL_4V9F_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.4

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

6SKF|1|BA|OMU|1969
6SKF|1|BA|G|1970
*
6SKF|1|BA|U|2011
6SKF|1|BA|A|2012
6SKF|1|BA|A|2013
6SKF|1|BA|A|2014

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2