IL_6SKG_075

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

G(OMC)GAG*CGUCGAAC

Length

13 nucleotides

Bulged bases

6SKG|1|BA|C|109

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_075 not in the Motif Atlas

Homologous match to IL_4V9F_004

Geometric discrepancy: 0.2036

The information below is about IL_4V9F_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.1

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

11

Unit IDs

6SKG|1|BA|G|90
6SKG|1|BA|OMC|91
6SKG|1|BA|G|92
6SKG|1|BA|A|93
6SKG|1|BA|G|94
*
6SKG|1|BA|C|106
6SKG|1|BA|G|107
6SKG|1|BA|U|108
6SKG|1|BA|C|109
6SKG|1|BA|G|110
6SKG|1|BA|A|111
6SKG|1|BA|A|112
6SKG|1|BA|C|113

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BX

50S ribosomal protein L24

Chain BZ

50S ribosomal protein L29