IL_6SKG_093

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGUUGACC*GUGAC

Length

13 nucleotides

Bulged bases

6SKG|1|BA|U|588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_093 not in the Motif Atlas

Geometric match to IL_5G4U_006

Geometric discrepancy: 0.1505

The information below is about IL_5G4U_006

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_69229.2

Basepair signature

cWW-tHS-tSH-tSS-cWW-cWW-cWW-L

Number of instances in this motif group

11

Unit IDs

6SKG|1|BA|G|585
6SKG|1|BA|G|586
6SKG|1|BA|U|587
6SKG|1|BA|U|588
6SKG|1|BA|G|589
6SKG|1|BA|A|590
6SKG|1|BA|C|591
6SKG|1|BA|C|592
*
6SKG|1|BA|G|635
6SKG|1|BA|U|636
6SKG|1|BA|G|637
6SKG|1|BA|A|638
6SKG|1|BA|C|639

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BI

50S ribosomal protein L7Ae

Chain Bd

50S ribosomal protein L32e

Chain Bf

Ribosomal protein eL35A