IL_6SKG_095
3D structure
- PDB id
- 6SKG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GGAAAC*GGAGUAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SKG_095 not in the Motif Atlas
- Homologous match to IL_4V9F_019
- Geometric discrepancy: 0.1908
- The information below is about IL_4V9F_019
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.6
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6SKG|1|BA|G|602
6SKG|1|BA|G|603
6SKG|1|BA|A|604
6SKG|1|BA|A|605
6SKG|1|BA|A|606
6SKG|1|BA|C|607
*
6SKG|1|BA|G|620
6SKG|1|BA|G|621
6SKG|1|BA|A|622
6SKG|1|BA|G|623
6SKG|1|BA|U|624
6SKG|1|BA|A|625
6SKG|1|BA|C|626
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BN
- 50S ribosomal protein L14e
- Chain Ba
- 50S ribosomal protein L30
- Chain Bf
- Ribosomal protein eL35A
- Chain Bm
- 30S ribosomal protein S17e
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