IL_6SKG_098

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAGG*CG

Length

6 nucleotides

Bulged bases

6SKG|1|BA|A|734, 6SKG|1|BA|G|735

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_098 not in the Motif Atlas

Homologous match to IL_4V9F_021

Geometric discrepancy: 0.1038

The information below is about IL_4V9F_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

6SKG|1|BA|C|733
6SKG|1|BA|A|734
6SKG|1|BA|G|735
6SKG|1|BA|G|736
*
6SKG|1|BA|C|761
6SKG|1|BA|G|762

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BO

50S ribosomal protein L15

Chain BR

50S ribosomal protein L18e