IL_82107.4

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4	1-4	2-3
1	IL_7JJU_003	7JJU	0.7716	3		B	PLRV_xrRNA	G	36	A	38	*	U	6	C	9	cWW	cWW
2	IL_7JJU_001	7JJU	0.7467	3		A	PLRV_xrRNA	G	36	A	38	*	U	6	C	9	cWW	cWW
3	IL_8CRE_070	8CRE	0.4498	2		1	LSU rRNA	G	1619	G	1620	*	U	1815	C	1818	cWW	ncWW
4	IL_4YAZ_007	4YAZ	0.3914	2	Multiple bulged bases	R	Cyclic di-GMP-I riboswitch	C	68	G	69	*	U	47	G	50	cWW	cWW
5	IL_5J7L_005	5J7L	0.2757	2	Multiple bulged bases	AA	SSU rRNA	U	103	G	104	*	C	63	A	66	cWW	cWW
6	IL_4LFB_005	4LFB	0.2770	2	Multiple bulged bases	A	SSU rRNA	C	103	G	104	*	C	63	G	66	cWW	cWW
7	IL_4YAZ_008	4YAZ	0.3674	2	Multiple bulged bases	R	Cyclic di-GMP-I riboswitch	G	51	G	52	*	C	64	C	67	cWW	cWW
8	IL_4V9F_021	4V9F	0.2801	2	Multiple bulged bases	0	LSU rRNA	C	726	G	727	*	C	699	G	702	cWW	cWW
9	IL_5M0H_004	5M0H	0.3045	2	Multiple bulged bases	A	ASH1 E3 (42 nt-TL/TLR)	A	35	C	36	*	G	8	U	11	cWW	ncWW
10	IL_4WF9_071	4WF9	0.2701	2	Major groove intercalation	X	LSU rRNA	U	1868	G	1869	*	U	1925	A	1928	cWW	cWW
11	IL_8CRE_398	8CRE	0.2198	2	Multiple bulged bases (H)	CM	SSU rRNA	A	298	A	299	*	U	113	U	116	cWW	cWW
12	IL_8P9A_381	8P9A	0.2284	2	Multiple bulged bases	sR	SSU rRNA	A	300	A	301	*	U	113	U	116	cWW	cWW
13	IL_5WLH_001	5WLH	0.1847	2	Multiple bulged bases	B	pre-crRNA	A	-23	G	-22	*	C	-7	U	-4	cWW	cWW
14	IL_5W1H_001	5W1H	0.1814	2	Multiple bulged bases	B	mature crRNA	A	-23	G	-22	*	C	-7	U	-4	cWW	cWW
15	IL_5XWP_001	5XWP	0.1536	2	Multiple bulged bases	C	RNA (59-MER)	A	5	C	6	*	G	22	U	25	cWW	cWW
16	IL_7OS0_002	7OS0	0.0910	2	Multiple bulged bases	F	crRNA	A	11	C	12	*	G	29	U	32	cWW	cWW
17	IL_5WTK_001	5WTK	0.0000	2	Multiple bulged bases	B	RNA (58-MER)	A	3	C	4	*	G	20	U	23	cWW	cWW
18	IL_1FUF_002	1FUF	0.1608	2	Multiple bulged bases	B+A	RNA (14-mer)	G	23	G	24	*	U	5	C	8	cWW	cWW
19	IL_1FUF_003	1FUF	0.1735	2	Multiple bulged bases	A+B	RNA (14-mer)	G	9	G	10	*	U	19	C	22	cWW	cWW
20	IL_3MXH_004	3MXH	0.1259	2	Multiple bulged bases	R	c-di-GMP riboswitch	G	56	G	57	*	U	81	C	84	cWW	cWW
21	IL_4V9F_067	4V9F	0.1476	2	Major groove intercalation	0	LSU rRNA	U	1897	G	1898	*	U	1939	A	1942	cWW	cWW
22	IL_5J7L_315	5J7L	0.1597	2	Major groove intercalation	DA	LSU rRNA	U	1841	G	1842	*	U	1898	A	1901	cWW	cWW
23	IL_3IWN_004	3IWN	0.1394	2	Multiple bulged bases	A	C-di-GMP riboswitch	G	46	G	47	*	U	76	C	79	cWW	cWW
24	IL_8P9A_313	8P9A	0.1682	2	Major groove intercalation	AR	LSU rRNA	U	2200	G	2201	*	U	2241	A	2244	cWW	cWW
25	IL_8CRE_090	8CRE	0.1599	2	Multiple bulged bases (H)	1	LSU rRNA	U	2178	G	2179	*	U	2219	A	2222	cWW	cWW
26	IL_8SP9_001	8SP9	0.1589	2	Multiple bulged bases	C	tRNA scaffold,CVB3 Cloverleaf RNA	C	106	G	107	*	C	76	G	79	cWW	cWW
27	IL_1U9S_003	1U9S	0.2386	2	Major groove intercalation	A	RIBONUCLEASE P	U	116	G	117	*	C	224	A	227	cWW	cWW
28	IL_1NBS_009	1NBS	0.2860	2	Major groove intercalation	B	RNase P class B	U	181	G	182	*	U	228	A	231	cWW	cWW
29	IL_6IV9_001	6IV9	0.2214	2	Multiple bulged bases	B	crRNA (50-MER)	A	-29	C	-28	*	G	-9	U	-6	cWW	cWW
30	IL_9DID_004	9DID	0.4129	2		B	frameshifting pseudoknot RNA	A	15	U	17	*	A	72	U	74	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UG*UAAA	5
GG*UUUC	3
AC*GACU	3
GAA*UAGC	2
AA*UCGU	2
AG*CAAU	2
GG*UAGC	2
CG*UAAG	1
UG*CGAA	1
CG*CGUG	1
GG*CAGC	1
CG*CAUG	1
AC*GAAU	1
UG*UCAA	1
CG*CUAG	1
UG*CAAA	1
AC*GUCU	1
ACU*AUU	1

Non-Watson-Crick part of the motif

Sequence	Counts
*AA	10
*UU	3
*AG	3
*AC	3
A*AG	2
*CG	2
*GA	1
*GU	1
*AU	1
*CA	1
*UA	1
*UC	1
C*U	1

Release history

Release	3.96	3.97
Date	2025-04-23	2025-05-21
Status	Updated, 1 parent	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_82107.4 Version IL_82107.4 of this group appears in releases 3.96 to 3.97 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_82107.4 Version IL_82107.4 of this group appears in releases 3.96 to 3.97

Download

Csv

Json