IL_6SKG_102

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

G(5MU)GAA(OMG)UC*G(A2M)UGGAGGC

Length

17 nucleotides

Bulged bases

6SKG|1|BA|G|855

QA status

Modified nucleotides: 5MU, OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_102 not in the Motif Atlas

Geometric match to IL_4WF9_119

Geometric discrepancy: 0.3947

The information below is about IL_4WF9_119

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00087.1

Basepair signature

cWW-L-R-tSH-L-cWS-R-L-R-L-R-cWW

Number of instances in this motif group

1

Unit IDs

6SKG|1|BA|G|828
6SKG|1|BA|5MU|829
6SKG|1|BA|G|830
6SKG|1|BA|A|831
6SKG|1|BA|A|832
6SKG|1|BA|OMG|833
6SKG|1|BA|U|834
6SKG|1|BA|C|835
*
6SKG|1|BA|G|848
6SKG|1|BA|A2M|849
6SKG|1|BA|U|850
6SKG|1|BA|G|851
6SKG|1|BA|G|852
6SKG|1|BA|A|853
6SKG|1|BA|G|854
6SKG|1|BA|G|855
6SKG|1|BA|C|856

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BS

50S ribosomal protein L19e

Chain Bg

50S ribosomal protein L37Ae