IL_6SKG_107

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGGAG*CGUAGAUG

Length

13 nucleotides

Bulged bases

6SKG|1|BA|A|1062

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_107 not in the Motif Atlas

Homologous match to IL_4V9F_031

Geometric discrepancy: 0.3714

The information below is about IL_4V9F_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_94910.1

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6SKG|1|BA|C|971
6SKG|1|BA|G|972
6SKG|1|BA|G|973
6SKG|1|BA|A|974
6SKG|1|BA|G|975
*
6SKG|1|BA|C|1059
6SKG|1|BA|G|1060
6SKG|1|BA|U|1061
6SKG|1|BA|A|1062
6SKG|1|BA|G|1063
6SKG|1|BA|A|1064
6SKG|1|BA|U|1065
6SKG|1|BA|G|1066

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BR

50S ribosomal protein L18e

Chain BU

50S ribosomal protein L21e

Chain Ba

50S ribosomal protein L30