IL_6SKG_115
3D structure
- PDB id
- 6SKG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- UUAAG*CGAGA
- Length
- 10 nucleotides
- Bulged bases
- 6SKG|1|BA|G|1288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SKG_115 not in the Motif Atlas
- Homologous match to IL_4V9F_037
- Geometric discrepancy: 0.107
- The information below is about IL_4V9F_037
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.1
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
6SKG|1|BA|U|1125
6SKG|1|BA|U|1126
6SKG|1|BA|A|1127
6SKG|1|BA|A|1128
6SKG|1|BA|G|1129
*
6SKG|1|BA|C|1285
6SKG|1|BA|G|1286
6SKG|1|BA|A|1287
6SKG|1|BA|G|1288
6SKG|1|BA|A|1289
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain Ba
- 50S ribosomal protein L30
- Chain Bd
- 50S ribosomal protein L32e
- Chain Bf
- Ribosomal protein eL35A
Coloring options: