IL_6SKG_116
3D structure
- PDB id
- 6SKG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CCCCAAAG*CG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SKG_116 not in the Motif Atlas
- Homologous match to IL_4V9F_038
- Geometric discrepancy: 0.1041
- The information below is about IL_4V9F_038
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
6SKG|1|BA|C|1131
6SKG|1|BA|C|1132
6SKG|1|BA|C|1133
6SKG|1|BA|C|1134
6SKG|1|BA|A|1135
6SKG|1|BA|A|1136
6SKG|1|BA|A|1137
6SKG|1|BA|G|1138
*
6SKG|1|BA|C|1282
6SKG|1|BA|G|1283
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BK
- 50S ribosomal protein L13
- Chain Ba
- 50S ribosomal protein L30
- Chain Bf
- Ribosomal protein eL35A
- Chain Bm
- 30S ribosomal protein S17e
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