IL_6SKG_118
3D structure
- PDB id
- 6SKG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CUAAG(OMU)G*CUUAAG
- Length
- 13 nucleotides
- Bulged bases
- 6SKG|1|BA|U|1273, 6SKG|1|BA|A|1275
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SKG_118 not in the Motif Atlas
- Homologous match to IL_4V9F_040
- Geometric discrepancy: 0.1071
- The information below is about IL_4V9F_040
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.6
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 6
Unit IDs
6SKG|1|BA|C|1145
6SKG|1|BA|U|1146
6SKG|1|BA|A|1147
6SKG|1|BA|A|1148
6SKG|1|BA|G|1149
6SKG|1|BA|OMU|1150
6SKG|1|BA|G|1151
*
6SKG|1|BA|C|1271
6SKG|1|BA|U|1272
6SKG|1|BA|U|1273
6SKG|1|BA|A|1274
6SKG|1|BA|A|1275
6SKG|1|BA|G|1276
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BG
- 50S ribosomal protein L6
- Chain BK
- 50S ribosomal protein L13
- Chain BN
- 50S ribosomal protein L14e
- Chain BT
- 50S ribosomal protein L18Ae
- Chain Bm
- 30S ribosomal protein S17e
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