IL_6SKG_121

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GC*GAUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_121 not in the Motif Atlas

Homologous match to IL_4V9F_045

Geometric discrepancy: 0.1671

The information below is about IL_4V9F_045

Detailed Annotation

Bulged stacked bases

Broad Annotation

No text annotation

Motif group

IL_72211.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6SKG|1|BA|G|1297
6SKG|1|BA|C|1298
*
6SKG|1|BA|G|1317
6SKG|1|BA|A|1318
6SKG|1|BA|U|1319
6SKG|1|BA|C|1320

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Ba

50S ribosomal protein L30

Chain Bd

50S ribosomal protein L32e