IL_6SKG_124

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGAG(OMU)AGC*G(OMC)GAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_124 not in the Motif Atlas

Geometric match to IL_4V9F_012

Geometric discrepancy: 0.2247

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6SKG|1|BA|G|1398
6SKG|1|BA|G|1399
6SKG|1|BA|A|1400
6SKG|1|BA|G|1401
6SKG|1|BA|OMU|1402
6SKG|1|BA|A|1403
6SKG|1|BA|G|1404
6SKG|1|BA|C|1405
*
6SKG|1|BA|G|2123
6SKG|1|BA|OMC|2124
6SKG|1|BA|G|2125
6SKG|1|BA|A|2126
6SKG|1|BA|A|2127
6SKG|1|BA|A|2128
6SKG|1|BA|C|2129

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BV

50S ribosomal protein L22