IL_6SKG_130

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUAG*CGAUC

Length

9 nucleotides

Bulged bases

6SKG|1|BA|U|1734

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_130 not in the Motif Atlas

Geometric match to IL_7RQB_057

Geometric discrepancy: 0.1754

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6SKG|1|BA|G|1550
6SKG|1|BA|U|1551
6SKG|1|BA|A|1552
6SKG|1|BA|G|1553
*
6SKG|1|BA|C|1731
6SKG|1|BA|G|1732
6SKG|1|BA|A|1733
6SKG|1|BA|U|1734
6SKG|1|BA|C|1735

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Be

50S ribosomal protein L34e