IL_6SKG_132

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUAAG*CGAAUG

Length

11 nucleotides

Bulged bases

6SKG|1|BA|U|1672

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_132 not in the Motif Atlas

Geometric match to IL_5TBW_071

Geometric discrepancy: 0.1538

The information below is about IL_5TBW_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

6SKG|1|BA|C|1616
6SKG|1|BA|U|1617
6SKG|1|BA|A|1618
6SKG|1|BA|A|1619
6SKG|1|BA|G|1620
*
6SKG|1|BA|C|1668
6SKG|1|BA|G|1669
6SKG|1|BA|A|1670
6SKG|1|BA|A|1671
6SKG|1|BA|U|1672
6SKG|1|BA|G|1673

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L19e

Chain Be

50S ribosomal protein L34e