IL_6SKG_134
3D structure
- PDB id
- 6SKG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GGGAGUG*CGAGAAC
- Length
- 14 nucleotides
- Bulged bases
- 6SKG|1|BA|U|1638, 6SKG|1|BA|A|1651
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SKG_134 not in the Motif Atlas
- Geometric match to IL_9E6Q_060
- Geometric discrepancy: 0.1211
- The information below is about IL_9E6Q_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93476.1
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
6SKG|1|BA|G|1633
6SKG|1|BA|G|1634
6SKG|1|BA|G|1635
6SKG|1|BA|A|1636
6SKG|1|BA|G|1637
6SKG|1|BA|U|1638
6SKG|1|BA|G|1639
*
6SKG|1|BA|C|1649
6SKG|1|BA|G|1650
6SKG|1|BA|A|1651
6SKG|1|BA|G|1652
6SKG|1|BA|A|1653
6SKG|1|BA|A|1654
6SKG|1|BA|C|1655
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain Aq
- 30S ribosomal protein S15
- Chain BM
- 50S ribosomal protein L14e
- Chain BS
- 50S ribosomal protein L19e
- Chain Bb
- 50S ribosomal protein L30e
- Chain Bg
- 50S ribosomal protein L37Ae
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