IL_9E6Q_060
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GGGAGUG*CGAGAAC
- Length
- 14 nucleotides
- Bulged bases
- 9E6Q|1|1|U|1635, 9E6Q|1|1|A|1648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9E6Q_060 not in the Motif Atlas
- Geometric match to IL_5TBW_073
- Geometric discrepancy: 0.3897
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
9E6Q|1|1|G|1630
9E6Q|1|1|G|1631
9E6Q|1|1|G|1632
9E6Q|1|1|A|1633
9E6Q|1|1|G|1634
9E6Q|1|1|U|1635
9E6Q|1|1|G|1636
*
9E6Q|1|1|C|1646
9E6Q|1|1|G|1647
9E6Q|1|1|A|1648
9E6Q|1|1|G|1649
9E6Q|1|1|A|1650
9E6Q|1|1|A|1651
9E6Q|1|1|C|1652
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain AJ
- eL14
- Chain AQ
- Large ribosomal subunit protein eL19
- Chain AZ
- Large ribosomal subunit protein eL30
- Chain Ac
- Large ribosomal subunit protein eL34
- Chain Ai
- Large ribosomal subunit protein eL43
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