IL_6SKG_138
3D structure
- PDB id
- 6SKG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- ACU(OMC)GG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 6SKG|1|BA|G|1821, 6SKG|1|BA|G|2105
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SKG_138 not in the Motif Atlas
- Homologous match to IL_4V9F_062
- Geometric discrepancy: 0.1177
- The information below is about IL_4V9F_062
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_28217.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 10
Unit IDs
6SKG|1|BA|A|1817
6SKG|1|BA|C|1818
6SKG|1|BA|U|1819
6SKG|1|BA|OMC|1820
6SKG|1|BA|G|1821
6SKG|1|BA|G|1822
*
6SKG|1|BA|C|2103
6SKG|1|BA|U|2104
6SKG|1|BA|G|2105
6SKG|1|BA|U|2106
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BD
- 50S ribosomal protein L3
- Chain BL
- 50S ribosomal protein L14
Coloring options: