IL_6SKG_139
3D structure
- PDB id
- 6SKG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CGUAAC*GGAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 6SKG|1|BA|G|1847
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SKG_139 not in the Motif Atlas
- Homologous match to IL_4V9F_063
- Geometric discrepancy: 0.0967
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
6SKG|1|BA|C|1834
6SKG|1|BA|G|1835
6SKG|1|BA|U|1836
6SKG|1|BA|A|1837
6SKG|1|BA|A|1838
6SKG|1|BA|C|1839
*
6SKG|1|BA|G|1844
6SKG|1|BA|G|1845
6SKG|1|BA|A|1846
6SKG|1|BA|G|1847
6SKG|1|BA|A|1848
6SKG|1|BA|A|1849
6SKG|1|BA|G|1850
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain Aa
- Small subunit ribosomal RNA; SSU rRNA
- Chain BS
- 50S ribosomal protein L19e
- Chain Bg
- 50S ribosomal protein L37Ae
- Chain Bk
- LSU ribosomal protein L41E
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