IL_6SKG_140

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

G(OMG)G*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_140 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1205

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6SKG|1|BA|G|1892
6SKG|1|BA|OMG|1893
6SKG|1|BA|G|1894
*
6SKG|1|BA|C|2099
6SKG|1|BA|C|2100
6SKG|1|BA|C|2101

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain BL

50S ribosomal protein L14