IL_6SKG_154

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

6SKG|1|BA|G|2340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_154 not in the Motif Atlas

Homologous match to IL_4V9F_076

Geometric discrepancy: 0.1309

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6SKG|1|BA|C|2193
6SKG|1|BA|A|2194
6SKG|1|BA|G|2195
*
6SKG|1|BA|U|2338
6SKG|1|BA|G|2339
6SKG|1|BA|G|2340
6SKG|1|BA|G|2341

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BP

50S ribosomal protein L15e

Chain Bl

50S ribosomal protein L44e