IL_6SKG_184

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CCUCU*ACG

Length

8 nucleotides

Bulged bases

6SKG|1|BA|C|2829

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_184 not in the Motif Atlas

Homologous match to IL_4V9F_093

Geometric discrepancy: 0.1249

The information below is about IL_4V9F_093

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

6SKG|1|BA|C|2785
6SKG|1|BA|C|2786
6SKG|1|BA|U|2787
6SKG|1|BA|C|2788
6SKG|1|BA|U|2789
*
6SKG|1|BA|A|2828
6SKG|1|BA|C|2829
6SKG|1|BA|G|2830

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BL

50S ribosomal protein L14

Chain BY

50S ribosomal protein L24e