IL_6SKG_192

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UGUAAG*UUCAG

Length

11 nucleotides

Bulged bases

6SKG|1|BA|C|3001

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_192 not in the Motif Atlas

Homologous match to IL_4V9F_099

Geometric discrepancy: 0.1038

The information below is about IL_4V9F_099

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

6SKG|1|BA|U|2973
6SKG|1|BA|G|2974
6SKG|1|BA|U|2975
6SKG|1|BA|A|2976
6SKG|1|BA|A|2977
6SKG|1|BA|G|2978
*
6SKG|1|BA|U|2999
6SKG|1|BA|U|3000
6SKG|1|BA|C|3001
6SKG|1|BA|A|3002
6SKG|1|BA|G|3003

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BY

50S ribosomal protein L24e