IL_6SKG_198

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUCUC*GACCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_198 not in the Motif Atlas

Homologous match to IL_4V9F_104

Geometric discrepancy: 0.1922

The information below is about IL_4V9F_104

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.12

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

12

Unit IDs

6SKG|1|BB|G|34
6SKG|1|BB|U|35
6SKG|1|BB|C|36
6SKG|1|BB|U|37
6SKG|1|BB|C|38
*
6SKG|1|BB|G|44
6SKG|1|BB|A|45
6SKG|1|BB|C|46
6SKG|1|BB|C|47
6SKG|1|BB|C|48

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BF

50S ribosomal protein L5

Chain BQ

50S ribosomal protein L18