IL_6SKG_216

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGAAA(OMG)*CGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_216 not in the Motif Atlas

Geometric match to IL_7ELQ_002

Geometric discrepancy: 0.3938

The information below is about IL_7ELQ_002

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6SKG|1|BA|C|579
6SKG|1|BA|G|580
6SKG|1|BA|A|581
6SKG|1|BA|A|582
6SKG|1|BA|A|583
6SKG|1|BA|OMG|584
*
6SKG|1|BA|C|640
6SKG|1|BA|G|641
6SKG|1|BA|G|642

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BI

50S ribosomal protein L7Ae

Chain Bd

50S ribosomal protein L32e

Chain Bf

Ribosomal protein eL35A