IL_6SKG_222

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGGG*CUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_222 not in the Motif Atlas

Geometric match to IL_8C3A_444

Geometric discrepancy: 0.3569

The information below is about IL_8C3A_444

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

6SKG|1|BA|G|1012
6SKG|1|BA|G|1013
6SKG|1|BA|G|1014
6SKG|1|BA|G|1015
*
6SKG|1|BA|C|1023
6SKG|1|BA|U|1024
6SKG|1|BA|C|1025
6SKG|1|BA|C|1026

Current chains

Chain BA

23S ribosomal RNA

Nearby chains