IL_6SKG_227

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGAACU(OMC)GG*CUGU(OMC)

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_227 not in the Motif Atlas

Homologous match to IL_4V9F_111

Geometric discrepancy: 0.096

The information below is about IL_4V9F_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6SKG|1|BA|G|1814
6SKG|1|BA|G|1815
6SKG|1|BA|A|1816
6SKG|1|BA|A|1817
6SKG|1|BA|C|1818
6SKG|1|BA|U|1819
6SKG|1|BA|OMC|1820
6SKG|1|BA|G|1821
6SKG|1|BA|G|1822
*
6SKG|1|BA|C|2103
6SKG|1|BA|U|2104
6SKG|1|BA|G|2105
6SKG|1|BA|U|2106
6SKG|1|BA|OMC|2107

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BL

50S ribosomal protein L14