IL_6SKG_229

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

(OMU)G*UAAA

Length

6 nucleotides

Bulged bases

6SKG|1|BA|A|2012, 6SKG|1|BA|A|2013

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_229 not in the Motif Atlas

Homologous match to IL_4V9F_067

Geometric discrepancy: 0.2018

The information below is about IL_4V9F_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

6SKG|1|BA|OMU|1969
6SKG|1|BA|G|1970
*
6SKG|1|BA|U|2011
6SKG|1|BA|A|2012
6SKG|1|BA|A|2013
6SKG|1|BA|A|2014

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2