IL_6SKG_231

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AA(OMG)*CUAU

Length

7 nucleotides

Bulged bases

6SKG|1|BA|A|2167, 6SKG|1|BA|U|2717, 6SKG|1|BA|A|2718

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_231 not in the Motif Atlas

Homologous match to IL_4V9F_073

Geometric discrepancy: 0.2171

The information below is about IL_4V9F_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

6SKG|1|BA|A|2166
6SKG|1|BA|A|2167
6SKG|1|BA|OMG|2168
*
6SKG|1|BA|C|2716
6SKG|1|BA|U|2717
6SKG|1|BA|A|2718
6SKG|1|BA|U|2719

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BV

50S ribosomal protein L22