IL_6SKG_232

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GA*(OMU)AC(OMC)

Length

6 nucleotides

Bulged bases

6SKG|1|BA|A|2543, 6SKG|1|BA|C|2544

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_232 not in the Motif Atlas

Homologous match to IL_4V9F_075

Geometric discrepancy: 0.2739

The information below is about IL_4V9F_075

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

6SKG|1|BA|G|2182
6SKG|1|BA|A|2183
*
6SKG|1|BA|OMU|2542
6SKG|1|BA|A|2543
6SKG|1|BA|C|2544
6SKG|1|BA|OMC|2545

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2