IL_6SNT_002
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CC*GCG
- Length
- 5 nucleotides
- Bulged bases
- 6SNT|1|3|C|151
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_002 not in the Motif Atlas
- Homologous match to IL_8C3A_002
- Geometric discrepancy: 0.1464
- The information below is about IL_8C3A_002
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_61258.13
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 40
Unit IDs
6SNT|1|1|C|7
6SNT|1|1|C|8
*
6SNT|1|3|G|150
6SNT|1|3|C|151
6SNT|1|3|G|152
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
- Chain 3
- 5.8S rRNA
Nearby chains
- Chain as
- 60S ribosomal protein L25
- Chain n
- 60S ribosomal protein L8-A
- Chain t
- 60S ribosomal protein L15-A
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