IL_6SNT_030

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SNT_030 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.097

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6SNT|1|1|U|834
6SNT|1|1|G|835
6SNT|1|1|A|836
6SNT|1|1|A|837
6SNT|1|1|G|838
*
6SNT|1|1|U|855
6SNT|1|1|G|856
6SNT|1|1|G|857
6SNT|1|1|A|858
6SNT|1|1|G|859

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain aa

60S ribosomal protein L43-A

Chain h

60S ribosomal protein L2-A

Chain x

60S ribosomal protein L19-A