IL_6SNT_061
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUAAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 6SNT|1|1|A|1588, 6SNT|1|1|A|1589
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_061 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.0676
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
6SNT|1|1|C|1532
6SNT|1|1|U|1533
6SNT|1|1|A|1534
6SNT|1|1|A|1535
6SNT|1|1|G|1536
*
6SNT|1|1|C|1585
6SNT|1|1|G|1586
6SNT|1|1|A|1587
6SNT|1|1|A|1588
6SNT|1|1|A|1589
6SNT|1|1|G|1590
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain ae
- 60S ribosomal protein L39
- Chain ag
- 60S ribosomal protein L37-A
- Chain aj
- 60S ribosomal protein L34-A
- Chain h
- 60S ribosomal protein L2-A
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