IL_6SNT_075
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 6SNT|1|1|G|2335
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_075 not in the Motif Atlas
- Homologous match to IL_8C3A_083
- Geometric discrepancy: 0.0902
- The information below is about IL_8C3A_083
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06455.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
6SNT|1|1|A|1901
6SNT|1|1|G|1902
6SNT|1|1|U|1903
6SNT|1|1|C|1904
6SNT|1|1|G|1905
6SNT|1|1|G|1906
*
6SNT|1|1|C|2333
6SNT|1|1|U|2334
6SNT|1|1|G|2335
6SNT|1|1|U|2336
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L23-A
- Chain i
- 60S ribosomal protein L3
Coloring options: