IL_6SNT_076
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 6SNT|1|1|U|1931
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_076 not in the Motif Atlas
- Geometric match to IL_4V9F_063
- Geometric discrepancy: 0.1102
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
6SNT|1|1|C|1918
6SNT|1|1|G|1919
6SNT|1|1|U|1920
6SNT|1|1|A|1921
6SNT|1|1|A|1922
6SNT|1|1|C|1923
*
6SNT|1|1|G|1928
6SNT|1|1|G|1929
6SNT|1|1|A|1930
6SNT|1|1|U|1931
6SNT|1|1|A|1932
6SNT|1|1|A|1933
6SNT|1|1|G|1934
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain aa
- 60S ribosomal protein L43-A
- Chain ac
- L41-A
- Chain x
- 60S ribosomal protein L19-A
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