IL_6SNT_085

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SNT_085 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.0829

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6SNT|1|1|U|2211
6SNT|1|1|C|2212
6SNT|1|1|A|2213
6SNT|1|1|A|2214
6SNT|1|1|A|2215
6SNT|1|1|G|2216
6SNT|1|1|U|2217
*
6SNT|1|1|A|2228
6SNT|1|1|A|2229
6SNT|1|1|C|2230
6SNT|1|1|C|2231
6SNT|1|1|A|2232
6SNT|1|1|A|2233
6SNT|1|1|G|2234

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain ab

60S ribosomal protein L42-A

Chain ah

60S ribosomal protein L36-A

Chain h

60S ribosomal protein L2-A