IL_6SNT_105

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6SNT|1|1|G|2945, 6SNT|1|1|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SNT_105 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0754

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6SNT|1|1|C|2879
6SNT|1|1|U|2880
6SNT|1|1|C|2881
*
6SNT|1|1|G|2943
6SNT|1|1|U|2944
6SNT|1|1|G|2945
6SNT|1|1|A|2946
6SNT|1|1|G|2947

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain NC

Uncharacterized protein YEL057C

Chain i

60S ribosomal protein L3