IL_6SNT_117
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AUUAU*AGAAU
- Length
- 10 nucleotides
- Bulged bases
- 6SNT|1|1|A|3130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_117 not in the Motif Atlas
- Homologous match to IL_8C3A_129
- Geometric discrepancy: 0.0894
- The information below is about IL_8C3A_129
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
6SNT|1|1|A|3103
6SNT|1|1|U|3104
6SNT|1|1|U|3105
6SNT|1|1|A|3106
6SNT|1|1|U|3107
*
6SNT|1|1|A|3127
6SNT|1|1|G|3128
6SNT|1|1|A|3129
6SNT|1|1|A|3130
6SNT|1|1|U|3131
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain ad
- Ubiquitin-60S ribosomal protein L40
- Chain o
- 60S ribosomal protein L9-A
- Chain u
- 60S ribosomal protein L16-A
Coloring options: