IL_6SNT_130
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGUAAG*CUGAG
- Length
- 11 nucleotides
- Bulged bases
- 6SNT|1|1|G|3369
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_130 not in the Motif Atlas
- Homologous match to IL_8C3A_139
- Geometric discrepancy: 0.0934
- The information below is about IL_8C3A_139
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83162.8
- Basepair signature
- cWW-cWW-tSH-cWW-tHH-L
- Number of instances in this motif group
- 4
Unit IDs
6SNT|1|1|U|3332
6SNT|1|1|G|3333
6SNT|1|1|U|3334
6SNT|1|1|A|3335
6SNT|1|1|A|3336
6SNT|1|1|G|3337
*
6SNT|1|1|C|3367
6SNT|1|1|U|3368
6SNT|1|1|G|3369
6SNT|1|1|A|3370
6SNT|1|1|G|3371
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain am
- 60S ribosomal protein L31-A
- Chain at
- 60S ribosomal protein L24-A
- Chain i
- 60S ribosomal protein L3
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